Publications

90 entries « 1 of 2 »

2019

'Project & Excite' Modules for Segmentation of Volumetric Medical Scans

Rickmann, Anne-Marie; Roy, Abhijit Guha; Sarasua, Ignacio; Navab, Nassir; Wachinger, Christian

'Project & Excite' Modules for Segmentation of Volumetric Medical Scans Inproceedings

Medical Image Computing and Computer Aided Intervention, Springer, 2019.

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Quantifying Confounding Bias in Neuroimaging Datasets with Causal Inference

Wachinger, Christian; Becker, Benjamin Gutierrez; Rieckmann, Anna; Pölsterl, Sebastian

Quantifying Confounding Bias in Neuroimaging Datasets with Causal Inference Incollection

Medical Image Computing and Computer Aided Intervention, 2019.

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Learning a Conditional Generative Model for Anatomical Shape Analysis

Gutiérrez-Becker, Benjamin; Wachinger, Christian

Learning a Conditional Generative Model for Anatomical Shape Analysis Inproceedings

International Conference on Information Processing in Medical Imaging (IPMI), pp. 505–516, Springer 2019.

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Manifold Exploring Data Augmentation with Geometric Transformations for Increased Performance and Robustness

Paschali, Magdalini; Simson, Walter; Roy, Abhijit Guha; Naeem, Muhammad Ferjad; Göbl, Rüdiger; Wachinger, Christian; Navab, Nassir

Manifold Exploring Data Augmentation with Geometric Transformations for Increased Performance and Robustness Journal Article

International Conference on Information Processing in Medical Imaging (IPMI), 2019.

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Bayesian QuickNAT: Model uncertainty in deep whole-brain segmentation for structure-wise quality control

Abhijit Guha Roy Sailesh Conjeti, Nassir Navab Christian Wachinger

Bayesian QuickNAT: Model uncertainty in deep whole-brain segmentation for structure-wise quality control Journal Article

NeuroImage, 195 , 2019.

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2018

QuickNAT: A Fully Convolutional Network for Quick and Accurate Segmentation of Neuroanatomy

Roy, Abhijit Guha; Conjeti, Sailesh; Navab, Nassir; Wachinger, Christian

QuickNAT: A Fully Convolutional Network for Quick and Accurate Segmentation of Neuroanatomy Journal Article

NeuroImage, 2018.

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Shape in Medical Imaging: International Workshop, ShapeMI 2018

Reuter, Martin; Wachinger, Christian; Lombaert, Hervé; Paniagua, Beatriz; Lüthi, Marcel; Egger, Bernhard

Shape in Medical Imaging: International Workshop, ShapeMI 2018 Book

Granada, Spain, Springer, 2018.

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Keypoint Transfer for Fast Whole-Body Segmentation

Wachinger, C; Toews, M; Langs, G; Wells, W; Golland, P

Keypoint Transfer for Fast Whole-Body Segmentation Journal Article

IEEE Transactions on Medical Imaging, 2018.

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Deep Shape Analysis on Abdominal Organs for Diabetes Prediction

Gutiérrez-Becker, Benjamin; Gatidis, Sergios; Gutmann, Daniel; Peters, Annette; Schlett, Christopher; Bamberg, Fabian; Wachinger, Christian

Deep Shape Analysis on Abdominal Organs for Diabetes Prediction Inproceedings

International Workshop on Shape in Medical Imaging, pp. 223–231, Springer 2018.

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Recalibrating Fully Convolutional Networks with Spatial and Channel 'Squeeze & Excitation' Blocks

Roy, Abhijit Guha; Navab, Nassir; Wachinger, Christian

Recalibrating Fully Convolutional Networks with Spatial and Channel 'Squeeze & Excitation' Blocks Journal Article

IEEE Transactions on Medical Imaging, 2018.

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Deep Multi-Structural Shape Analysis: Application to Neuroanatomy

Gutierrez-Becker, Benjamin; Klein, Tassilo; Wachinger, Christian

Deep Multi-Structural Shape Analysis: Application to Neuroanatomy Conference Forthcoming

MICCAI 2018, Forthcoming.

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Concurrent Spatial and Channel Squeeze & Excitation in Fully Convolutional Networks

Roy, Abhijit Guha; Navab, Nassir; Wachinger, Christian

Concurrent Spatial and Channel Squeeze & Excitation in Fully Convolutional Networks Conference Forthcoming

Accepted at MICCAI 2018, Forthcoming.

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Inherent Brain Segmentation Quality Control from Fully ConvNet Monte Carlo Sampling

Roy, Abhijit Guha; Conjeti, Sailesh; Navab, Nassir; Wachinger, Christian

Inherent Brain Segmentation Quality Control from Fully ConvNet Monte Carlo Sampling Conference Forthcoming

Accepted at MICCAI 2018, Forthcoming.

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A Longitudinal Imaging Genetics Study of Neuroanatomical Asymmetry in Alzheimer’s Disease

Wachinger, Christian ; Nho, Kwangsik ; Saykin, Andrew J; Reuter, Martin ; Rieckmann, Anna

A Longitudinal Imaging Genetics Study of Neuroanatomical Asymmetry in Alzheimer’s Disease Journal Article

Biological Psychiatry, 2018.

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Gaussian process uncertainty in age estimation as a measure of brain abnormality

Gutierrez-Becker, Benjamin ; Klein, Tassilo ; Wachinger, Christian

Gaussian process uncertainty in age estimation as a measure of brain abnormality Journal Article

NeuroImage, 2018.

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Fast MRI Whole Brain Segmentation with Fully Convolutional Neural Networks

Roy, Abhijit Guha ; Conjeti, Sailesh ; Navab, Nassir ; Wachinger, Christian

Fast MRI Whole Brain Segmentation with Fully Convolutional Neural Networks Incollection

Bildverarbeitung für die Medizin 2018, pp. 42–42, Springer, 2018.

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2017

A Multi-Armed Bandit to Smartly Select a Training Set from Big Medical Data

Gutierrez-Becker, Benjamin; Peter, Loic; Klein, Tassilo; Wachinger, Christian

A Multi-Armed Bandit to Smartly Select a Training Set from Big Medical Data Conference

Proceedings of MICCAI 2017, Elsevier, 2017.

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Guiding Multimodal Registration with Learned Optimization Updates

Gutierrez-Becker, Benjamin ; Mateus, Diana ; Peter, Loic ; Navab, Nassir

Guiding Multimodal Registration with Learned Optimization Updates Journal Article

Medical Image Analysis, 2017.

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Riva, Marco ; Hennersperger, Christoph ; Milletari, Fausto ; Katouzian, Amin ; Pessina, Federico ; Gutierrez-Becker, Benjamin ; Castellano, Antonella ; Navab, Nassir ; Bello, Lorenzo

3D intra-operative ultrasound and MR image guidance: pursuing an ultrasound-based management of brainshift to enhance neuronavigation Journal Article

International Journal of Computer Assisted Radiology and Surgery, pp. 1–15, 2017.

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Reuter, Martin ; Wachinger, Christian

Abtract: Shape Analysis in Human Brain MRI Incollection

Bildverarbeitung für die Medizin 2017, pp. 358–358, Springer Vieweg, Berlin, Heidelberg, 2017.

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DeepNAT: Deep Convolutional Neural Network for Segmenting Neuroanatomy

Wachinger, Christian ; Reuter, Martin ; Klein, Tassilo

DeepNAT: Deep Convolutional Neural Network for Segmenting Neuroanatomy Journal Article

NeuroImage, 2017.

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Conjeti, Sailesh ; Guha Roy, Abhijit ; Katouzian, Amin ; Navab, Nassir

Deep Residual Hashing Journal Article

Accepted at MICCAI 2017, 2017.

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Guha Roy, Abhijit ; Conjeti, Sailesh ; Karri, Sri Phani Krishna ; Sheet, Debdoot ; Katouzian, Amin ; Wachinger, Christian ; Navab, Nassir

ReLayNet: Retinal Layer and Fluid Segmentation of Macular Optical Coherence Tomography using Fully Convolutional Network Journal Article

Accepted at Biomedical Optics Express, 2017.

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Error Corrective Boosting for Learning Fully Convolutional Networks with Limited Data

Guha Roy, Abhijit ; Conjeti, Sailesh ; Sheet, Debdoot ; Katouzian, Amin ; Navab, Nassir ; Wachinger, Christian

Error Corrective Boosting for Learning Fully Convolutional Networks with Limited Data Journal Article

Accepted at MICCAI 2017, 2017.

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Latent Processes Governing Neuroanatomical Change in Aging and Dementia

Wachinger, Christian ; Rieckmann, Anna ; Reuter, Martin

Latent Processes Governing Neuroanatomical Change in Aging and Dementia Inproceedings

International Conference on Medical Image Computing and Computer-Assisted Intervention, Springer 2017.

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Wachinger, Christian ; Volkmer, Susanne ; Bublath, Katharina ; Bruder, Jennifer ; Bartling, J{ü}rgen ; Schulte-K{ö}rne, Gerd

Does the late positive component reflect successful reading acquisition? A longitudinal ERP study Journal Article

NeuroImage: Clinical, 2017.

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2016

Dubost, Florian ; Peter, Loic ; Rupprecht, Christian ; Gutierrez-Becker, Benjamin ; Navab, Nassir

Hands-Free Segmentation of Medical Volumes via Binary Inputs Proceeding

Springer International Publishing 2016.

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Gutierrez-Becker, Benjamin ; Mateus, Diana ; Peter, Loic ; Navab, Nassir

Learning Optimization Updates for Multimodal Registration Proceeding

Springer 2016.

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Simonovsky, Martin; Gutierrez-Becker, Benjamin; Mateus, Diana; Navab, Nassir; Komodakis, Nikos

A Deep Metric for Multimodal Registration Proceeding

Springer 2016.

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Wachinger, Christian ; Reuter, Martin

Domain adaptation for Alzheimer's disease diagnostics Journal Article

NeuroImage, 2016.

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Wachinger, C; Brennan, M; Sharp, G; Golland, P

Efficient Descriptor-Based Segmentation of Parotid Glands with Non-Local Means. Journal Article

IEEE transactions on bio-medical engineering, 2016.

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Wachinger, Christian ; Salat, David H; Weiner, Michael ; Reuter, Martin ; Initiative, Alzheimer’s Disease Neuroimaging; others,

Whole-brain analysis reveals increased neuroanatomical asymmetries in dementia for hippocampus and amygdala Journal Article

Brain, 139 (12), pp. 3253–3266, 2016.

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Reuter, Martin ; Wachinger, Christian ; Lombaert, Herv{'e}

Spectral and Shape Analysis in Medical Imaging: First International Workshop, SeSAMI 2016, Held in Conjunction with MICCAI 2016, Athens, Greece, October 21, 2016, Revised Selected Papers Miscellaneous

2016.

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Conjeti, Sailesh ; Katouzian, Amin ; Guha Roy, Abhijit ; Peter, Lo{"i}c ; Sheet, Debdoot ; Carlier, St{'e}phane ; Laine, Andrew ; Navab, Nassir

Supervised domain adaptation of decision forests: Transfer of models trained in vitro for in vivo intravascular ultrasound tissue characterization Journal Article

Medical image analysis, 32 , pp. 1–17, 2016.

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Conjeti, S; Guha Roy, A; Sheet, D; Carlier, S; Syeda-Mahmood, T; Navab, N; Katouzian, A

Domain Adapted Model for In Vivo Intravascular Ultrasound Tissue Characterization Journal Article

Computing and Visualization for Intravascular Imaging and Computer-Assisted Stenting, pp. 157, 2016.

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2015

Wachinger, Christian ; Golland, Polina ; Magnain, Caroline ; Fischl, Bruce ; Reuter, Martin

Multi-modal robust inverse-consistent linear registration Journal Article

Human brain mapping, 36 (4), pp. 1365–1380, 2015.

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Wachinger, Christian ; Golland, Polina ; Kremen, William ; Fischl, Bruce ; Reuter, Martin ; Initiative, Alzheimer's Disease Neuroimaging; others,

BrainPrint: A discriminative characterization of brain morphology Journal Article

NeuroImage, 109 , pp. 232–248, 2015.

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Bron, Esther E; Smits, Marion ; van der Flier, Wiesje M; Vrenken, Hugo ; Barkhof, Frederik ; Scheltens, Philip ; Papma, Janne M; Steketee, Rebecca ME ; Orellana, Carolina M{'e}ndez ; Meijboom, Rozanna ; others,

Standardized evaluation of algorithms for computer-aided diagnosis of dementia based on structural MRI: The CADDementia challenge Journal Article

NeuroImage, 111 , pp. 562–579, 2015.

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Wachinger, Christian ; Golland, Polina

Diverse Landmark Sampling from Determinantal Point Processes for Scalable Manifold Learning Journal Article

arXiv preprint arXiv:1503.03506, 2015.

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Toews, Matthew ; Wachinger, Christian ; Estepar, Raul San Jose ; Wells III, William M

A Feature-based Approach to Big Data Analysis of Medical Images Inproceedings

International Conference on Information Processing in Medical Imaging, pp. 339–350, Springer International Publishing 2015.

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Wachinger, Christian ; Golland, Polina

Sampling from determinantal point processes for scalable manifold learning Journal Article

Information Processing in Medical Imaging. Lecture Notes in Computer Science, Springer, pp. 687–698, 2015.

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Wachinger, C; Toews, M; Langs, G; Wells, W; Golland, P

Keypoint Transfer Segmentation Inproceedings

Information Processing in Medical Imaging, Springer 2015.

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Wachinger, Christian ; Fritscher, Karl ; Sharp, Greg ; Golland, Polina

Countour-Driven Atlas-Based Segmenation Journal Article

Transactions on medical imaging, 2015.

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2014

Gutierrez-Becker, Benjamin ; Mateus, Diana ; Shiban, Ehab ; Meyer, Bernhard ; Lehmberg, Jens ; Navab, Nassir

A sparse approach to build shape models with routine clinical data Proceeding

IEEE 2014.

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Magnain, Caroline ; Augustinack, Jean C; Reuter, Martin ; Wachinger, Christian ; Frosch, Matthew P; Ragan, Timothy ; Akkin, Taner ; Wedeen, Van J; Boas, David A; Fischl, Bruce

Blockface histology with optical coherence tomography: A comparison with Nissl staining Journal Article

NeuroImage, 84 , pp. 524–533, 2014.

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Wachinger, Christian ; Golland, Polina

Atlas-based under-segmentation Inproceedings

International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 315–322, Springer International Publishing 2014.

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Wachinger, Christian ; Golland, Polina ; Reuter, Martin

BrainPrint: identifying subjects by their brain Inproceedings

International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 41–48, Springer International Publishing 2014.

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Wachinger, C; Batmanghelich, K; Golland, P; Reuter, M

BrainPrint in the Computer-Aided Diagnosis of Alzheimer’s Disease Inproceedings

Proc MICCAI Workshop Challenge on Computer-Aided Diagnosis of Dementia Based on Structural MRI Data, pp. 129–138, 2014.

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Wachinger, Christian ; Brennan, Matthew ; Sharp, Greg C; Golland, Polina

On the importance of location and features for the patch-based segmentation of parotid glands Inproceedings

MICCAI Workshop on Image-Guided Adaptive Radiation Therapy, 2014.

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Wachinger, C; Batmanghelich, K; Golland, P; Reuter, M

BrainPrint in the computer-aided diagnosis of Alzheimer’s disease Inproceedings

Proc MICCAI workshop challenge on computer-aided diagnosis of dementia based on structural MRI data, pp. 129–138, 2014.

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90 entries « 1 of 2 »